miRBase entry: cin-mir-4031

Stem-loop cin-mir-4031


Accession
MI0015582
Description
Ciona intestinalis cin-mir-4031 precursor miRNA


Sequence

907 reads, 313 reads per million, 2 experiments
CCCAAAGUGUCGGCGCAUAUucuuaaauaaccgaACAUGUACCGUCGCUCUGGG
((((.((((.(((.((((.(((..........))).)))).))).)))).))))

Structure
    A    U   C    A   uuaa 
CCCA AGUG CGG GCAU Uuc    a
|||| |||| ||| |||| |||     
GGGU UCGC GCC UGUA Aag    u
    C    U   A    C   ccaa 


Annotation confidence High
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Genome context
1q: 7488678-7488731 [+]

Database links

Mature cin-miR-4031-5p

Accession MIMAT0016551
Description Ciona intestinalis cin-miR-4031-5p mature miRNA
Sequence 1 - CCCAAAGUGUCGGCGCAUAU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4031-3p

Accession MIMAT0016552
Description Ciona intestinalis cin-miR-4031-3p mature miRNA
Sequence 35 - ACAUGUACCGUCGCUCUGGG - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39