miRBase entry: cin-mir-4061

Stem-loop cin-mir-4061


Accession
MI0015612
Description
Ciona intestinalis cin-mir-4061 precursor miRNA


Sequence

374 reads, 142 reads per million, 2 experiments
AGGCGGUCCCUCAGAUGGUUucgauucugaAACACUCUGGCGUUCCGUCA
.(((((..(.(((((..((((((....))))))..))))).)..))))).

Structure
A     UC C     UG      a 
 GGCGG  C UCAGA  GUUucg u
 |||||  | |||||  ||||||  
 CUGCC  G GGUCU  CAAagu u
A     UU C     CA      c 


Annotation confidence Not enough data
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Genome context
scaffold_65: 663351-663400 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4061
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4061-5p

Accession MIMAT0016610
Description Ciona intestinalis cin-miR-4061-5p mature miRNA
Sequence 1 - AGGCGGUCCCUCAGAUGGUU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4061-3p

Accession MIMAT0016611
Description Ciona intestinalis cin-miR-4061-3p mature miRNA
Sequence 31 - AACACUCUGGCGUUCCGUCA - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39