miRBase entry: cin-mir-4071

Stem-loop cin-mir-4071


Accession
MI0015622
Description
Ciona intestinalis cin-mir-4071 precursor miRNA


Sequence

327 reads, 115 reads per million, 2 experiments
CUUGCUCUUACUGUGACAUCccuugccaagGGAUAUCCAGACAGGGCAAA
.(((((((..(((.((.(((((((...))))))).)))))..))))))).

Structure
C       UA   U  C       g 
 UUGCUCU  CUG GA AUCccuu  
 |||||||  ||| || ||||||| c
 AACGGGA  GAC CU UAGGgaa  
A       CA   -  A       c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
9q: 1934609-1934658 [+]

Database links

Mature cin-miR-4071-5p

Accession MIMAT0016630
Description Ciona intestinalis cin-miR-4071-5p mature miRNA
Sequence 1 - CUUGCUCUUACUGUGACAUC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4071-3p

Accession MIMAT0016631
Description Ciona intestinalis cin-miR-4071-3p mature miRNA
Sequence 31 - GGAUAUCCAGACAGGGCAAA - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39