miRBase entry: cin-mir-4076

Stem-loop cin-mir-4076


Accession
MI0015627
Description
Ciona intestinalis cin-mir-4076 precursor miRNA


Sequence

19 reads, 8 reads per million, 2 experiments
CAACGAGUCCCUGAAAAAUCCCgacauacaaauucgGGUGUUUCAGGGAAUCGUUA
.(((((.(((((((((...(((((.........)))))..))))))))).))))).

Structure
C     G         AAU     cau 
 AACGA UCCCUGAAA   CCCga   a
 ||||| |||||||||   |||||   c
 UUGCU AGGGACUUU   GGgcu   a
A     A         -GU     uaa 


Annotation confidence Not enough data
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Genome context
1p: 5317680-5317735 [-]

Database links

Mature cin-miR-4076-5p

Accession MIMAT0016640
Description Ciona intestinalis cin-miR-4076-5p mature miRNA
Sequence 1 - CAACGAGUCCCUGAAAAAUCCC - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4076-3p

Accession MIMAT0016641
Description Ciona intestinalis cin-miR-4076-3p mature miRNA
Sequence 37 - GGUGUUUCAGGGAAUCGUUA - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39