miRBase entry: cin-mir-4079

Stem-loop cin-mir-4079


Accession
MI0015632
Description
Ciona intestinalis cin-mir-4079 precursor miRNA
Gene family
MIPF0001273; mir-4079


Sequence

45 reads, 14 reads per million, 2 experiments
UGCUUCAUCUACUAGGUUAGCUggaacagcUAGCUCUAGCUGAUGUAGCA
((((.((((..((((((((((((...)))))))).))))..)))).))))

Structure
    U    UA    -        g 
UGCU CAUC  CUAG GUUAGCUg  
|||| ||||  |||| |||||||| a
ACGA GUAG  GAUC CGAUcgac  
    U    UC    U        a 


Annotation confidence Not enough data
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Genome context
7q: 1174112-1174161 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cin-mir-4079
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4079-5p

Accession MIMAT0016647
Description Ciona intestinalis cin-miR-4079-5p mature miRNA
Sequence 1 - UGCUUCAUCUACUAGGUUAGCU - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4079-3p

Accession MIMAT0016648
Description Ciona intestinalis cin-miR-4079-3p mature miRNA
Sequence 31 - UAGCUCUAGCUGAUGUAGCA - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39