miRBase entry: cin-mir-4081

Stem-loop cin-mir-4081


Accession
MI0015634
Description
Ciona intestinalis cin-mir-4081 precursor miRNA
Gene family
MIPF0001241; mir-4081


Sequence

100 reads, 34 reads per million, 2 experiments
UAGUUCAACUCCAUACAGAAuuguggucucaGUUCUGUAUAAGUUGAGCUG
((((((((((..(((((((((((......))))))))))).))))))))))

Structure
          CC           ug 
UAGUUCAACU  AUACAGAAuug  g
||||||||||  |||||||||||   
GUCGAGUUGA  UAUGUCUUGac  u
          -A           uc 


Annotation confidence Not enough data
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Genome context
2q: 6481027-6481077 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4081
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4081-5p

Accession MIMAT0016651
Description Ciona intestinalis cin-miR-4081-5p mature miRNA
Sequence 1 - UAGUUCAACUCCAUACAGAA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4081-3p

Accession MIMAT0016652
Description Ciona intestinalis cin-miR-4081-3p mature miRNA
Sequence 32 - GUUCUGUAUAAGUUGAGCUG - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39