miRBase entry: cin-mir-4109

Stem-loop cin-mir-4109


Accession
MI0015663
Description
Ciona intestinalis cin-mir-4109 precursor miRNA


Sequence

1 reads, 1 reads per million, 1 experiments
ACCCCGCUUAAUCGACCCAAguuuaaccggaccaguuuggcuuggucccaauGUGGUCCGAUUAAGCGGG
..((((((((((((..(((.(((.....(((((((......))))))).))).)))..))))))))))))

Structure
AC            AC   A   uaacc       uu 
  CCCGCUUAAUCG  CCA guu     ggaccag  u
  ||||||||||||  ||| |||     |||||||   
  GGGCGAAUUAGC  GGU uaa     ccugguu  g
--            CU   G   ----c       cg 


Annotation confidence Not enough data
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Genome context
2q: 960375-960444 [+]

Database links

Mature cin-miR-4109-5p

Accession MIMAT0016696
Description Ciona intestinalis cin-miR-4109-5p mature miRNA
Sequence 1 - ACCCCGCUUAAUCGACCCAA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4109-3p

Accession MIMAT0016697
Description Ciona intestinalis cin-miR-4109-3p mature miRNA
Sequence 53 - GUGGUCCGAUUAAGCGGG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39