miRBase entry: cin-mir-4119

Stem-loop cin-mir-4119


Accession
MI0015673
Description
Ciona intestinalis cin-mir-4119 precursor miRNA


Sequence

8 reads, 5 reads per million, 2 experiments
CGUUUUGUUUGCCAUUCAGCagggaaugaaguguugCCGAAUGGCAGGCUAAACAU
.((((.(((((((((((.((((.(.......).)))).))))))))))).))))..

Structure
-C    U           A    g aa 
  GUUU GUUUGCCAUUC GCag g  u
  |||| ||||||||||| |||| |  g
  CAAA CGGACGGUAAG Cguu u  a
UA    U           C    g ga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-4119-5p

Accession MIMAT0016710
Description Ciona intestinalis cin-miR-4119-5p mature miRNA
Sequence 1 - CGUUUUGUUUGCCAUUCAGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4119-3p

Accession MIMAT0016711
Description Ciona intestinalis cin-miR-4119-3p mature miRNA
Sequence 37 - CCGAAUGGCAGGCUAAACAU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39