miRBase entry: cin-mir-4146

Stem-loop cin-mir-4146


Accession
MI0015701
Description
Ciona intestinalis cin-mir-4146 precursor miRNA


Sequence

cuuauuggcaagaauuuugcuggccaaaguuuuguuaagAAAAUUUCUUGCCAGGAGAG
(((..(((((((((.(((.((...(((....)))...)).))).))))))))).)))..

Structure
--   au         u   g  ggc   a 
  cuu  uggcaagaa uuu cu   caa g
  |||  ||||||||| ||| ||   |||  
  GAG  ACCGUUCUU AAA ga   guu u
GA   -G         U   A  auu   u 


Annotation confidence Not enough data
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Genome context
2q: 4695598-4695656 [-]

Database links

Mature cin-miR-4146-3p

Accession MIMAT0016749
Description Ciona intestinalis cin-miR-4146-3p mature miRNA
Sequence 40 - AAAAUUUCUUGCCAGGAGAG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39