miRBase entry: cin-mir-4158

Stem-loop cin-mir-4158


Accession
MI0015713
Description
Ciona intestinalis cin-mir-4158 precursor miRNA


Sequence

6 reads, 5 reads per million, 2 experiments
UGCCCGAUGAUGUUAUUGUUUUgcauguauuaacuuaacgcagauauguggaguucauuucacacugagggcauuaacuguuuuaaauguuguugcuuuugcaaacauauaacacacuagcc
.((..(.((.(((((((((((.(((...............(((...((((((......)))))))))((((((.((((..........)))).)))))))))))))).)))))))))..)).

Structure
U  CC A  A      -     U   uguauuaacuuaacgcagauauguggaguucauuucacacug      u    uguu 
 GC  G UG UGUUAU UGUUU gca                                          agggca uaac    u
 ||  | || |||||| ||||| |||                                          |||||| ||||     
 cg  c ac acaaua acaaa cgu                                          uuucgu guug    u
c  au -  -      u     -   ------------------------------------------      u    uaaa 


Annotation confidence Not enough data
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Genome context
12q: 435082-435203 [+]

Database links

Mature cin-miR-4158-5p

Accession MIMAT0016764
Description Ciona intestinalis cin-miR-4158-5p mature miRNA
Sequence 1 - UGCCCGAUGAUGUUAUUGUUUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39