miRBase entry: cin-mir-4178b

Stem-loop cin-mir-4178b


Accession
MI0015734
Description
Ciona intestinalis cin-mir-4178b precursor miRNA
Gene family
MIPF0000928; mir-4178


Sequence

1 reads, 1 reads per million, 1 experiments
AUGCAAACUUGAUCAGGUUUUAgcauuacaauuguugcuuuuaacuuggaacccguuugcaa
.(((((((....(((((((..((((..........))))...))))))).....))))))).

Structure
A       -UUGA       -UU    uuac 
 UGCAAAC     UCAGGUU   Agca    a
 |||||||     |||||||   ||||     
 acguuug     gguucaa   ucgu    a
a       cccaa       uuu    uguu 


Annotation confidence Not enough data
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Genome context
scaffold_67: 367799-367860 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4178b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4178b-5p

Accession MIMAT0016789
Description Ciona intestinalis cin-miR-4178b-5p mature miRNA
Sequence 1 - AUGCAAACUUGAUCAGGUUUUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39