miRBase entry: cin-mir-4185

Stem-loop cin-mir-4185


Accession
MI0015742
Description
Ciona intestinalis cin-mir-4185 precursor miRNA


Sequence

5 reads, 3 reads per million, 2 experiments
CAGCGGUGAUGAUAAUACcuggacgugauuuauaaugaugcauguUGUAUUCAUACUGUCUGAGCUG
((((((((.(((..((((...((((((..(((...)))..)))))))))))))))))).))).....

Structure
-----   -     A   UA    cug      au   u 
     CAG CGGUG UGA  AUAC   gacgug  uua  
     ||| ||||| |||  ||||   ||||||  ||| a
     GUC GUCAU ACU  UAUG   Uuguac  agu  
GUCGA   U     -   --    ---      gu   a 


Annotation confidence Not enough data
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Genome context
9q: 3199937-3200003 [+]

Database links

Mature cin-miR-4185-5p

Accession MIMAT0016802
Description Ciona intestinalis cin-miR-4185-5p mature miRNA
Sequence 1 - CAGCGGUGAUGAUAAUAC - 18
Evidence experimental
Illumina [1]

Mature cin-miR-4185-3p

Accession MIMAT0016803
Description Ciona intestinalis cin-miR-4185-3p mature miRNA
Sequence 46 - UGUAUUCAUACUGUCUGAGCUG - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39