miRBase entry: cin-mir-4194

Stem-loop cin-mir-4194


Accession
MI0015751
Description
Ciona intestinalis cin-mir-4194 precursor miRNA


Sequence

UGACGUAAAACGUGUGUGacgcaagccagugugUGGUAUAUAUGUGUGUGG
.........((((((((..((((........))))..))))))))......

Structure
UGACGUAAA        Ga    agc 
         ACGUGUGU  cgca   c
         ||||||||  ||||    
         UGUAUAUA  GUgu   a
---GGUGUG        UG    gug 


Annotation confidence Not enough data
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Genome context
3p: 4387310-4387360 [+]

Database links

Mature cin-miR-4194-5p

Accession MIMAT0016812
Description Ciona intestinalis cin-miR-4194-5p mature miRNA
Sequence 1 - UGACGUAAAACGUGUGUG - 18
Evidence experimental
Illumina [1]

Mature cin-miR-4194-3p

Accession MIMAT0016813
Description Ciona intestinalis cin-miR-4194-3p mature miRNA
Sequence 34 - UGGUAUAUAUGUGUGUGG - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39