miRBase entry: cin-mir-4212

Stem-loop cin-mir-4212


Accession
MI0015769
Description
Ciona intestinalis cin-mir-4212 precursor miRNA


Sequence

9 reads, 6 reads per million, 1 experiments
ugcuaugaaucguuuuaaguuuguuuaaaccuuauuuaauaaAGCUAAUGAAUCGUUUCA
((..((((.(((((...(((((..(((((.....)))))..)))))))))).))))..))

Structure
  cu    a     uua     gu     c 
ug  auga ucguu   aguuu  uuaaa c
||  |||| |||||   |||||  ||||| u
AC  UGCU AGUAA   UCGAa  aauuu u
  UU    A     ---     au     a 


Annotation confidence Not enough data
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Genome context
3p: 2990259-2990318 [+]

Database links

Mature cin-miR-4212-3p

Accession MIMAT0016833
Description Ciona intestinalis cin-miR-4212-3p mature miRNA
Sequence 43 - AGCUAAUGAAUCGUUUCA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39