miRBase entry: aly-MIR4224

Stem-loop aly-MIR4224


Accession
MI0015785
Description
Arabidopsis lyrata aly-MIR4224 precursor miRNA


Sequence

2 reads, 70 reads per million, 1 experiments
aaagguuuuuuucgggacagagaugagaaagacucagcuauuuguugaaaaugaaauaucugugaagcgaaaaaccuuuuuuuuuauucaacaaaCAACUGAGCUUCCUCAUCUCUgucacaauaagagaucuaug
..(((((((((...(((((((((((((.(((.(((((...(((((((((...((((.....((..........))....))))...)))))))))...)))))))).)))))))))))).)...)))))))))...

Structure
-aa         ucg -            a   a     cua         aau    uaucu  gaag 
   agguuuuuu   g gacagagaugag aag cucag   uuuguugaa   gaaa     gu    c
   |||||||||   | |||||||||||| ||| |||||   |||||||||   ||||     ||     
   ucuagagaa   c cugUCUCUACUC UUC GAGUC   aaacaacuu   uuuu     ca    g
gua         uaa a            C   -     AAC         auu    -uuuc  aaaa 


Annotation confidence Not enough data
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Genome context
GL348713.1: 24611224-24611359 [+]

Database links

Mature aly-miR4224

Accession MIMAT0017912
Description Arabidopsis lyrata aly-miR4224 mature miRNA
Sequence 96 - CAACUGAGCUUCCUCAUCUCU - 116
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103