miRBase entry: aly-MIR4229

Stem-loop aly-MIR4229


Accession
MI0015790
Description
Arabidopsis lyrata aly-MIR4229 precursor miRNA


Sequence

acauaaaucguccuaaaaccUUGGCAGGGAGGUCCUCCACACacaauauuuacaaggacguuuugcacguugcauucuuugaaauugaugugaauauuguguguggagacaucuuugucaagguguuagaugauuuauauuaa
..((((((((((.(((.(((((((((((((.(((.(((((((((((((((((((..(((((.....))))).................)))))))))))))))))))))).))))))))))))).))))))))))))).....

Structure
---ac          c   a             G   C                   ---------------ag     u 
     auaaaucguc uaa accUUGGCAGGGA GUC UCCACACacaauauuuaca                 gacgu u
     |||||||||| ||| ||||||||||||| ||| |||||||||||||||||||                 ||||| u
     uauuuaguag auu uggaacuguuucu cag agguguguguuauaagugu                 uugca g
aauua          -   g             a   -                   aguuaaaguuucuuacg     c 


Annotation confidence Not enough data
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Genome context
GL348715.1: 6816117-6816259 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR4229
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR4229

Accession MIMAT0017917
Description Arabidopsis lyrata aly-miR4229 mature miRNA
Sequence 21 - UUGGCAGGGAGGUCCUCCACAC - 42
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103