miRBase entry: ath-MIR4239

Stem-loop ath-MIR4239


Accession
MI0015819
Description
Arabidopsis thaliana ath-MIR4239 precursor miRNA
Gene family
MIPF0001164; MIR4239


Sequence

ucuuguuugcacauuuugucUUUGUUAUUUUCGCAUGCUCCuuugaaacuuuuugugcauggaugugaaacucuucacuggagcauacggcgauaacgaaaacaaggugugcauauaaacuuu
..((((.((((((((((((.(((((((((.(((.(((((((..((((...((((..(((....)))))))...))))..))))))).))).))))))))).)))))))))))).)))).....

Structure
---uc    u            c         U   C       uu    acu    gu   u 
     uugu ugcacauuuugu UUUGUUAUU UCG AUGCUCC  ugaa   uuuu  gca g
     |||| |||||||||||| ||||||||| ||| |||||||  ||||   ||||  |||  
     aaua acguguggaaca aagcaauag ggc uacgagg  acuu   aaag  ugu g
uuuca    u            a         c   a       uc    cuc    --   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 11368752-11368874 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR4239
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR4239

Accession MIMAT0017947
Description Arabidopsis thaliana ath-miR4239 mature miRNA
Sequence 21 - UUUGUUAUUUUCGCAUGCUCC - 41
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103