miRBase entry: hsa-mir-500b

Stem-loop hsa-mir-500b


Accession
MI0015903
Symbol
HGNC: MIR500B
Description
Homo sapiens hsa-mir-500b precursor miRNA
Gene family
MIPF0000139; mir-500

Literature search
28 open access papers mention hsa-mir-500b
(65 sentences)

Sequence

7482 reads, 127 reads per million, 91 experiments
cccccucucuAAUCCUUGCUACCUGGGUgagagugcuuucugaaugcaguGCACCCAGGCAAGGAUUCUGcaaggggga
((((((..(.(((((((((...(((((((..(.(((.........))).).))))))))))))))))..)..)))))).

Structure
-      cu -u         UAC       ag g   uuu 
 cccccu  c  AAUCCUUGC   CUGGGUg  a ugc   c
 ||||||  |  |||||||||   |||||||  | |||   u
 ggggga  G  UUAGGAACG   GACCCAC  u acg   g
a      ac UC         ---       -G g   uaa 


Annotation confidence Not enough data
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Genome context
chrX: 50010672-50010750 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from hsa-mir-500b
Name Accession Chromosome Start End Strand Confidence




Disease association
hsa-mir-500b is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-500b-5p

Accession MIMAT0016925
Description Homo sapiens hsa-miR-500b-5p mature miRNA
Sequence 11 - AAUCCUUGCUACCUGGGU - 28
Evidence experimental
SOLiD [1], Illumina [2]
Database links
Predicted targets

Mature hsa-miR-500b-3p

Accession MIMAT0027032
Description Homo sapiens hsa-miR-500b-3p mature miRNA
Sequence 51 - GCACCCAGGCAAGGAUUCUG - 70
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 19784364
    Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors
    Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP
    PLoS One (2009) 4:e7192

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45