miRBase entry: ssc-mir-296

Stem-loop ssc-mir-296


Accession
MI0015906
Description
Sus scrofa ssc-mir-296 precursor miRNA
Gene family
MIPF0000159; mir-296

Literature search
5 open access papers mention ssc-mir-296
(6 sentences)

Sequence

37 reads, 31 reads per million, 6 experiments
gacccuuccgGAGGGCCCCCCCCAAUCCUGUugugcuggauucagAGGGUUGGGCGGAGGCUUUCCugaaggcucug
((.(((((.((((((((.(((((((((((.(((.........)))))))))))).)).)))))))).))))).))..

Structure
--  c     c        C  -         G   ugc 
  ga ccuuc gGAGGGCC CC CCCAAUCCU Uug   u
  || ||||| |||||||| || ||||||||| |||   g
  cu ggaag CCUUUCGG GG GGGUUGGGA gac   g
gu  c     u        A  C         -   uua 


Annotation confidence Not enough data
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Genome context
chr17: 66288704-66288780 [-]

Database links

Mature ssc-miR-296-5p

Accession MIMAT0017952
Description Sus scrofa ssc-miR-296-5p mature miRNA
Sequence 11 - GAGGGCCCCCCCCAAUCCUGU - 31
Evidence experimental
Illumina [1-3]

Mature ssc-miR-296-3p

Accession MIMAT0022958
Description Sus scrofa ssc-miR-296-3p mature miRNA
Sequence 46 - AGGGUUGGGCGGAGGCUUUCC - 66
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100