miRBase entry: tgu-mir-204-5

Stem-loop tgu-mir-204-5


Accession
MI0015938
Description
Taeniopygia guttata tgu-mir-204-5 precursor miRNA
Gene family
MIPF0000042; mir-204

Literature search
1 open access papers mention tgu-mir-204-5
(1 sentences)

Sequence

gcUUCCCUUUGUCAUCCUAUGCCUgagcgaugccuggaggcugggacggccaagggaggc
(((((((((.(((.(((((.((((..((...))....))))))))).))).)))))))))

Structure
         U   A     U    --ga  g 
gcUUCCCUU GUC UCCUA GCCU    gc  
||||||||| ||| ||||| ||||    || a
cggagggaa cgg agggu cgga    cg  
         c   c     -    gguc  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tgu-miR-204

Accession MIMAT0014570
Description Taeniopygia guttata tgu-miR-204 mature miRNA
Sequence 3 - UUCCCUUUGUCAUCCUAUGCCU - 24
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727