miRBase entry: tgu-mir-34c-1

Stem-loop tgu-mir-34c-1


Accession
MI0015939
Description
Taeniopygia guttata tgu-mir-34c-1 precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

cuugguuugcAGGCAGUGUAGUUAGCUGAUUGUcugcagaauuccacAAUCACUAACUUCACUGCCACCaaaacaag
((((..(((..(((((((.((((((.(((((((............))))))))))))).)))))))..)))..))))

Structure
    gu   cA       U      C       cugca 
cuug  uug  GGCAGUG AGUUAG UGAUUGU     g
||||  |||  ||||||| |||||| |||||||      
gaac  aaC  CCGUCAC UCAAUC ACUAAca     a
    aa   CA       U      -       ccuua 


Annotation confidence Not enough data
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Genome context
chr24: 1752711-1752787 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-34c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-34c-5p

Accession MIMAT0016928
Description Taeniopygia guttata tgu-miR-34c-5p mature miRNA
Sequence 11 - AGGCAGUGUAGUUAGCUGAUUGU - 33
Evidence experimental
Illumina [1-2]

Mature tgu-miR-34c-3p

Accession MIMAT0027033
Description Taeniopygia guttata tgu-miR-34c-3p mature miRNA
Sequence 48 - AAUCACUAACUUCACUGCCACC - 69
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727