miRBase entry: vvi-MIR3624

Stem-loop vvi-MIR3624


Accession
MI0016017
Description
Vitis vinifera vvi-MIR3624 precursor miRNA

Literature search
2 open access papers mention vvi-MIR3624
(6 sentences)

Sequence

8215 reads, 552 reads per million, 2 experiments
gggUAGUAUGCUGCUGUCUUUAGAauaucuggaugaaguuuaucucugcaagguggcaagaacaucaagaguacuaugguggcuucucugcuggguuaaggcuucuucuggggugauuugauaucaauacucuugaugguuuugccaccuuugcagaucaugagcuccauucucagcuucUCAGGGCAGCAGCAUACUACUu
.(((((((((((((((((((.((((.....(((((.(((((((.(((((((((((((((((.(((((((((((...(((((((......)))..(((((((((((....)))))..)))))))))).))))))))))).)))))))))).)))))))..))))))).))))).....)))).))))))))))))))))))).

Structure
g                   U    uaucu     a       -c       -          a           cua    ggcuucucugcugg      --     u 
 ggUAGUAUGCUGCUGUCUU AGAa     ggaug aguuuau  ucugcaa gguggcaaga caucaagagua   uggu              guuaag  gcuuc u
 ||||||||||||||||||| ||||     ||||| |||||||  ||||||| |||||||||| |||||||||||   ||||              ||||||  |||||  
 UCAUCAUACGACGACGGGA Ucuu     cuuac ucgagua  agacguu ccaccguuuu guaguucucau   acua              uaguuu  ugggg c
u                   C    cgacu     c       cu       u          g           --a    --------------      ag     u 


Annotation confidence Not enough data
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Genome context
chr8: 2139190-2139391 [+]

Database links

Mature vvi-miR3624-5p

Accession MIMAT0018011
Description Vitis vinifera vvi-miR3624-5p mature miRNA
Sequence 4 - UAGUAUGCUGCUGUCUUUAGA - 24
Evidence experimental
Illumina [1]

Mature vvi-miR3624-3p

Accession MIMAT0018012
Description Vitis vinifera vvi-miR3624-3p mature miRNA
Sequence 181 - UCAGGGCAGCAGCAUACUACU - 201
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20230504
    Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
    "Plant J (2010) 62:960-976