Stem-loop vvi-MIR3629c

Accession

MI0016024

Description

Vitis vinifera vvi-MIR3629c precursor miRNA

Literature search

2 open access papers mention vvi-MIR3629c
(2 sentences)

Sequence

169 reads, 12 reads per million, 2 experiments

ucuguuuGGCUGCUGAGAAAAUGUAGGAaaagcgaugaagcuugaggacauaaaaauagguuggguuugagacggcuguugcccucuuuccuuuuccuuucauuucucaguaaccaaaggga
(((.(((((.((((((((((.((.((((((((.((..((((((((...............))))))))((((.(((....))).))))))))))))))..)))))))))))).))))).)))

Structure

   g     C          A  -U        c  ------------------ug        ggacau 
ucu uuuGG UGCUGAGAAA UG  AGGAaaag ga                    aagcuuga      a
||| ||||| |||||||||| ||  |||||||| ||                    ||||||||      a
agg aaacc augacucuuu ac  uccuuuuc cu                    uuuggguu      a
   g     a          -  uu        -  uucucccguugucggcagag        ggauaa 

Annotation confidence Not enough data

Genome context

chr17: 822213-822334 [+]

Mature vvi-miR3629c

• Accession: MIMAT0018024
• Description: Vitis vinifera vvi-miR3629c mature miRNA
• Sequence: 8 - GGCUGCUGAGAAAAUGUAGGA - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976