miRBase entry: vvi-MIR477b

Stem-loop vvi-MIR477b


Accession
MI0016025
Description
Vitis vinifera vvi-MIR477b precursor miRNA
Gene family
MIPF0000216; MIR477

Literature search
2 open access papers mention vvi-MIR477b
(2 sentences)

Sequence

61 reads, 4 reads per million, 2 experiments
gccaacacgaggcauuucuauugcucACUCUUUCUCAAGGGCUUCUAGcauugccaguaacaaaauggcaagcuCGAAGUCUUUGGGGAGAGUGGacaaacguugucucgaauaugc
.......(((((((......(((.((((((((((.((((((((((.(((.((((((.........))))))))).)))))))))))))))))))).)))....))))))).......

Structure
gccaaca       uuucua   c          U          U   a      gua 
       cgaggca      uug ucACUCUUUC CAAGGGCUUC AGc uugcca   a
       |||||||      ||| |||||||||| |||||||||| ||| ||||||   c
       gcucugu      aac GGUGAGAGGG GUUUCUGAAG ucg aacggu   a
cguauaa       --ugca   a          -          C   -      aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 1237689-1237805 [+]

Database links

Mature vvi-miR477b-5p

Accession MIMAT0018025
Description Vitis vinifera vvi-miR477b-5p mature miRNA
Sequence 27 - ACUCUUUCUCAAGGGCUUCUAG - 48
Evidence experimental
Illumina [1]

Mature vvi-miR477b-3p

Accession MIMAT0018026
Description Vitis vinifera vvi-miR477b-3p mature miRNA
Sequence 75 - CGAAGUCUUUGGGGAGAGUGG - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20230504
    Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
    "Plant J (2010) 62:960-976