miRBase entry: vvi-MIR3631b

Stem-loop vvi-MIR3631b


Accession
MI0016028
Description
Vitis vinifera vvi-MIR3631b precursor miRNA
Gene family
MIPF0001100; MIR3631

Literature search
2 open access papers mention vvi-MIR3631b
(4 sentences)

Sequence

406 reads, 19 reads per million, 2 experiments
gugguguuuguuuuuuauuuuuucuauucagcuaaaaguaaCAUGUUGACAUCAUCCAAUAUAacuaaacugaaccuauugauaacaaguucauuuuagcuaUGUUGGAUGAUGUCAAUAAGUuacuuuuaacuaaauaaaaaaagccaaaaaacaaacaccac
((((((((((((((((.((((((.((((.((.((((((((((.((((((((((((((((((((.(((((.(((((...(((....)))))))).))))).)))))))))))))))))))).)))))))))).)).)))).))))))..))))))))))))))))

Structure
                -a      c    c  c          A                    a     c     cua   a 
gugguguuuguuuuuu  uuuuuu uauu ag uaaaaguaaC UGUUGACAUCAUCCAAUAUA cuaaa ugaac   uug u
||||||||||||||||  |||||| |||| || |||||||||| |||||||||||||||||||| ||||| |||||   |||  
caccacaaacaaaaaa  gaaaaa auaa uc auuuucauUG AUAACUGUAGUAGGUUGUau gauuu acuug   aac a
                cc      a    a  a          A                    c     u     ---   a 


Annotation confidence Low
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Genome context
chr5: 6430141-6430304 [+]

Database links

Mature vvi-miR3631b-5p

Accession MIMAT0018031
Description Vitis vinifera vvi-miR3631b-5p mature miRNA
Sequence 42 - CAUGUUGACAUCAUCCAAUAUA - 63
Evidence experimental
Illumina [1]

Mature vvi-miR3631b-3p

Accession MIMAT0018032
Description Vitis vinifera vvi-miR3631b-3p mature miRNA
Sequence 103 - UGUUGGAUGAUGUCAAUAAGU - 123
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20230504
    Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
    "Plant J (2010) 62:960-976