Stem-loop vvi-MIR3631c

Accession

MI0016029

Description

Vitis vinifera vvi-MIR3631c precursor miRNA

Gene family

MIPF0001100; MIR3631

Literature search

2 open access papers mention vvi-MIR3631c
(4 sentences)

Sequence

179 reads, 2 reads per million, 2 experiments

uagauaaauaaaugcaaauuuuaguaaguacuuuucuuaauaaguucuaauaaauauaaauuuaggugguguuuuuuuuuugucugaauauaaaagacuaaaauauuugacuuuuuauauuuaguuaaaaguaaCAUGUUGACAUCAUCCAAUAUAacuaaacucaacauauuaauaauaaguucacuuuaaucauauuggaugauaucaacaaguuacuuuuaacugaauaaaaaauacuaaaauauuuugauuuuuucuaauucaaucaaaaaacaaauaccaccuuaauuaaccauuuaagauguauuuucuuauuuuuauuuauuuuuuua
((((.(((((((((.((((...((.((((((...((((((...(((............((((.(((((((((((.(((((((..(((((..((((((.((((((((((....((((.((((((((((((((((((.((((((.((((((((((((...((((...(((.((((...)))).)))...))))...)))))))))))).)))))).)))))))))))))))))).)))).....)))))))))).))))))...)))))..))))))).))))))))))).)))))))...)))))).)))))).)).)))).))))))))).))))

Structure

    u         c    uuu  u      uuu      uaa   cuaauaaauaua    u           u       uc     -au      c          -gacu    a                  A      C            Aac    cuc   a    a 
uaga aaauaaaug aaau   ag aaguac   ucuuaa   guu            aauu aggugguguuu uuuuuug  ugaau   aaaaga uaaaauauuu     uuuu uauuuaguuaaaaguaaC UGUUGA AUCAUCCAAUAU   uaaa   aac uauu  
|||| ||||||||| ||||   || ||||||   ||||||   |||            |||| ||||||||||| |||||||  |||||   |||||| ||||||||||     |||| |||||||||||||||||| |||||| ||||||||||||   ||||   ||| |||| a
auuu uuuauuuau uuua   uc uuuaug   agaauu   caa            uuaa uccaccauaaa aaaaaac  acuua   uuuuuu guuuuauaaa     aaaa auaagucaauuuucauug acaacu uaguagguuaua   auuu   uug auaa  
    u         u    --u  u      --u      uac   ------------    u           c       ua     auc      a          aucau    a                  a      a            cua    cac   a    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature vvi-miR3631c

• Accession: MIMAT0018033
• Description: Vitis vinifera vvi-miR3631c mature miRNA
• Sequence: 135 - CAUGUUGACAUCAUCCAAUAUA - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976