Stem-loop vvi-MIR3636

Accession

MI0016036

Description

Vitis vinifera vvi-MIR3636 precursor miRNA

Literature search

2 open access papers mention vvi-MIR3636
(5 sentences)

Sequence

37754 reads, 2536 reads per million, 2 experiments

uaauuuauuugucgaauagacucuUCGGUUUGCUUCUUUGAUAGAUUCagugauaugucauguaauuuuguucaaaauuaaggacauuuauuuacuguGUCUGUCGGAGAAGCAAGUCGGAGagucucuucagaugaauug
(((((((((((..((...((((((((((((((((((((((((((((.((((((.(((((...(((((((....)))))))..)))))....)))))).))))))))))))))))))))))))))))))..)))))))))))

Structure

           uc  aua                            U      ---u     aug       g 
uaauuuauuug  ga   gacucuUCGGUUUGCUUCUUUGAUAGAU Caguga    auguc   uaauuuu u
|||||||||||  ||   |||||||||||||||||||||||||||| ||||||    |||||   |||||||  
guuaaguagac  cu   cugaGAGGCUGAACGAAGAGGCUGUCUG gucauu    uacag   auuaaaa u
           uu  ---                            u      uauu     -ga       c 

Annotation confidence High

Genome context

chr16: 5414826-5414966 [-]

Mature vvi-miR3636-5p

• Accession: MIMAT0018045
• Description: Vitis vinifera vvi-miR3636-5p mature miRNA
• Sequence: 25 - UCGGUUUGCUUCUUUGAUAGAUUC - 48
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3636-3p

• Accession: MIMAT0018046
• Description: Vitis vinifera vvi-miR3636-3p mature miRNA
• Sequence: 99 - GUCUGUCGGAGAAGCAAGUCGGAG - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976