miRBase entry: vvi-MIR3637

Stem-loop vvi-MIR3637


Accession
MI0016037
Description
Vitis vinifera vvi-MIR3637 precursor miRNA

Literature search
1 open access papers mention vvi-MIR3637
(1 sentences)

Sequence

953 reads, 67 reads per million, 2 experiments
ugacaugaugacauuaugaguaauauuuuauaaaauuaaggguAUUUAUGUAUUGUGUUUUGUCGGAaaauauguuuggauaguuugauuuugaaacugacauuauauuccgacuguauuauuggauaauacuauuUUUCGACAAGACACAAUGCAUAAAugcucuuaauuuuauaaaauuuaugaguaugccauugugucg
.(((((((((.(((.((..((((.((((((((((((((((((((((((((((((((((((((((((((((((...(((((((((((.......)))))).........)))))..(((((((...)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))..))))).))))))))).

Structure
u         a   u  ga    u                                                ----------------ugu     ---------      ga 
 gacaugaug cau au  guaa auuuuauaaaauuaaggguAUUUAUGUAUUGUGUUUUGUCGGAaaaua                   uugga         uaguuu  u
 ||||||||| ||| ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||                   |||||         ||||||  u
 cuguguuac gua ug  uauu uaaaauauuuuaauucucguAAAUACGUAACACAGAACAGCUUUuuau                   agccu         gucaaa  u
g         c   -  ag    -                                                cauaauagguuauuauguc     uauauuaca      gu 


Annotation confidence Not enough data
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Genome context
chr16: 20659651-20659852 [-]

Database links

Mature vvi-miR3637-5p

Accession MIMAT0018047
Description Vitis vinifera vvi-miR3637-5p mature miRNA
Sequence 44 - AUUUAUGUAUUGUGUUUUGUCGGA - 67
Evidence experimental
Illumina [1]

Mature vvi-miR3637-3p

Accession MIMAT0018048
Description Vitis vinifera vvi-miR3637-3p mature miRNA
Sequence 137 - UUUCGACAAGACACAAUGCAUAAA - 160
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20230504
    Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
    "Plant J (2010) 62:960-976