Stem-loop vvi-MIR3638

Accession

MI0016038

Description

Vitis vinifera vvi-MIR3638 precursor miRNA

Literature search

2 open access papers mention vvi-MIR3638
(3 sentences)

Sequence

54 reads, 5 reads per million, 2 experiments

auauaaugauaaauaauaaacugcuguaacuacuuuauuuuuuguuugccuugggugcuuuggUGUGCCUUUUCGCGCUUGUUGCUAauauauauauauauaggcaaaaauauauauuaGCAACAAGCAUGAAAAGGCACACCaaagcaccgagggcaaacaaaaaauaaagguaguuacaacaguuuauuauucaucauuauau
((((((((((.((((((((((((.((((((((((((((((((((((((((((.((((((((((((((((((((((.(((((((((((((((((((..............))))))))))))))))))).)))))))))))))))))))))).))))))))))))))))))).))))))))).)))))))))))).))))))))))

Structure

          a            c         -                   g                      C                   auauau 
auauaaugau aauaauaaacug uguaacuac uuuauuuuuuguuugccuu ggugcuuuggUGUGCCUUUUCG GCUUGUUGCUAauauauau      a
|||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||       
uauauuacua uuauuauuugac acauugaug aaauaaaaaacaaacggga ccacgaaaCCACACGGAAAAGU CGAACAACGauuauauaua      g
          c            a         g                   g                      A                   aaaacg 

Annotation confidence Not enough data

Genome context

chr17: 7119929-7120133 [-]

Mature vvi-miR3638-5p

• Accession: MIMAT0018049
• Description: Vitis vinifera vvi-miR3638-5p mature miRNA
• Sequence: 64 - UGUGCCUUUUCGCGCUUGUUGCUA - 87
• Evidence: experimental ; Illumina [1]

Mature vvi-miR3638-3p

• Accession: MIMAT0018050
• Description: Vitis vinifera vvi-miR3638-3p mature miRNA
• Sequence: 120 - GCAACAAGCAUGAAAAGGCACACC - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20230504
   Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
   "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
   "Plant J (2010) 62:960-976