miRBase entry: vvi-MIR3639

Stem-loop vvi-MIR3639


Accession
MI0016039
Description
Vitis vinifera vvi-MIR3639 precursor miRNA

Literature search
2 open access papers mention vvi-MIR3639
(8 sentences)

Sequence

93 reads, 8 reads per million, 2 experiments
guucaaaagcucuuguugaauaacaaugauacacgaugaagcuucguuauaaaaaaacuuuuaaaaccuguuuggAUUGACUUCUGAAAGGCUAAAAGCucuuauuaagcuuaaauaaGAGCUUUUGGCUUCUCAGAAGUCAauccaaacaaggucuuaaaauuuuuuuauaauaaaguuugaaacguuguuauuaucaucaacgcuuuuguac
((.(((((((..(((.((((((((((((........(.((((((.((((((((((((.((((((.((((((((((((((((((((((.((((((((((((((((((.......)))))))))))))))))).)))))))))))))))))).)))).)))))))))))))))))).)))))).)..)))))))))..))).))).))))))).))

Structure
  u       uc   u   --         auacacga g      c            c      a    -                  A                  aa 
gu caaaagc  uug uga  auaacaaug        u aagcuu guuauaaaaaaa uuuuaa accu guuuggAUUGACUUCUGA AGGCUAAAAGCucuuauu  g
|| |||||||  ||| |||  |||||||||        | |||||| |||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||  c
ca guuuucg  aac acu  uauuguugc        a uuugaa uaauauuuuuuu aaaauu ugga caaaccuaACUGAAGACU UUCGGUUUUCGAGaauaa  u
  u       -c   u   au         ------aa g      a            -      c    a                  C                  au 


Annotation confidence Not enough data
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Genome context
chr9: 21823006-21823219 [+]

Database links

Mature vvi-miR3639-5p

Accession MIMAT0018051
Description Vitis vinifera vvi-miR3639-5p mature miRNA
Sequence 76 - AUUGACUUCUGAAAGGCUAAAAGC - 99
Evidence experimental
Illumina [1]

Mature vvi-miR3639-3p

Accession MIMAT0018052
Description Vitis vinifera vvi-miR3639-3p mature miRNA
Sequence 119 - GAGCUUUUGGCUUCUCAGAAGUCA - 142
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20230504
    Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
    "Plant J (2010) 62:960-976