miRBase entry: ame-mir-11

Stem-loop ame-mir-11


Accession
MI0016136
Description
Apis mellifera ame-mir-11 precursor miRNA
Gene family
MIPF0000252; mir-11

Literature search
2 open access papers mention ame-mir-11
(7 sentences)

Sequence

auggaggauagccguacccugauggagcucuggcugugacuuguguguuaacugaauuaaaaucaCAUCACAGGCAGAGUUCUAGUUagguaacgguuucaaacaaca
.((...((.((((((..(((((((((((((((.((((((..((((..................)))))))))).)))))))))).)))))..))))))))...))...

Structure
--a  gag  u      ac     -          g      cu    uguuaacu 
   ug   ga agccgu  ccuga uggagcucug cuguga  ugug        g
   ||   || ||||||  ||||| |||||||||| ||||||  ||||         
   ac   cu uuggca  ggaUU AUCUUGAGAC GACACU  ACac        a
aca  aaa  -      au     G          G      --    uaaaauua 


Annotation confidence Not enough data
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Genome context
CM000062.5: 5463633-5463740 [-]

Database links

Mature ame-miR-11-3p

Accession MIMAT0018506
Description Apis mellifera ame-miR-11-3p mature miRNA
Sequence 66 - CAUCACAGGCAGAGUUCUAGUU - 87
Evidence experimental
SOLID [1], Illumina [2]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670