miRBase entry: ame-mir-2788

Stem-loop ame-mir-2788


Accession
MI0016140
Description
Apis mellifera ame-mir-2788 precursor miRNA
Gene family
MIPF0001204; mir-2788


Sequence

agguuggaguucguugcggcaggguugggguuucuaugcggcaugugccuugcuuugagaaaugCAAUGCCCUUCGAAAUCCCAAAaauguccaacgcuuaucaaca
..(((((....(((((.((((...((((((((((...(.(((((.(((.((.........)).)))))))))...))))))))))...)))))))))....))))).

Structure
ag     aguu     c    ggg          uau c     g   c  gcu 
  guugg    cguug ggca   uugggguuuc   g ggcau ugc uu   u
  |||||    ||||| ||||   ||||||||||   | ||||| ||| ||   u
  caacu    gcaac cugu   AACCCUAAAG   C CCGUA ACg aa   g
-a     auuc     -    aaA          CUU -     -   u  aga 


Annotation confidence Not enough data
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Genome context
CM000054.5: 211099-211205 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ame-mir-2788
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-2788-3p

Accession MIMAT0018510
Description Apis mellifera ame-miR-2788-3p mature miRNA
Sequence 65 - CAAUGCCCUUCGAAAUCCCAAA - 86
Evidence experimental
SOLID [1], Illumina [2]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226