miRBase entry: ame-mir-3049

Stem-loop ame-mir-3049


Accession
MI0016158
Description
Apis mellifera ame-mir-3049 precursor miRNA

Literature search
1 open access papers mention ame-mir-3049
(2 sentences)

Sequence

ugcaggaguaaaagcaauugaaucguguucccaggUCGGGAAGGUAGUUGCGGCGGAUuuggucaacugcaaaagUCCGUCCAACUCCUUUCCGUCUugguggcgcgaauuccuccuccu
...(((((...........((((((((((.(((((.((((((((.(((((.(((((((((.((.....))..)))))))))))))))))))))).))))).)))))).)))))))))...

Structure
ugc     uaaaagcaauu    -      c     U        U     C         -g  c 
   aggag           gaau cguguu ccagg CGGGAAGG AGUUG GGCGGAUuu  gu a
   |||||           |||| |||||| ||||| |||||||| ||||| |||||||||  || a
   uccuc           cuua gcgcgg gguUC GCCUUUCC UCAAC CUGCCUgaa  cg c
ucc     -----------    a      u     U        -     -         aa  u 


Annotation confidence Not enough data
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Genome context
CM000063.5: 3983815-3983934 [+]

Database links

Mature ame-miR-3049-3p

Accession MIMAT0018528
Description Apis mellifera ame-miR-3049-3p mature miRNA
Sequence 76 - UCCGUCCAACUCCUUUCCGUCU - 97
Evidence experimental
SOLID [1], Illumina [4]

Mature ame-miR-3049-5p

Accession MIMAT0022968
Description Apis mellifera ame-miR-3049-5p mature miRNA
Sequence 36 - UCGGGAAGGUAGUUGCGGCGGAU - 58
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22458842
    Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
    "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
    "Insect Mol Biol (2012) 21:297-303

  3. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  4. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226