Stem-loop sequence ame-mir-9c

Accession

MI0016202 (change log)

Description

Apis mellifera miR-9c stem-loop

Gene family

MIPF0000014; mir-9

Stem-loop

   gcu      --        -uaccaaauc   c  uu      u     g       a  g      gaau 
5'    guuuca  cacauuuc          guc cg  uauuuu cuuug ugagcua cu uauggu    u
      ||||||  ||||||||          ||| ||  |||||| ||||| ||||||| || ||||||     
3'    uaaagu  guguaaag          cag gc  auagaa ggaac acuugau ga auaccg    g
   --u      ca        uacuucgaua   a  uu      c     g       c  a      gaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AMEL4.5; GCA_000002195.1): CM000066.5: 1395236-1395374 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ame-mir-9c

• ame-mir-3478: CM000066.5: 1395549-1395626 [+]
• ame-mir-3791: CM000066.5: 1395544-1395636 [-]
• ame-mir-279b: CM000066.5: 1395401-1395527 [-]
• ame-mir-9c: CM000066.5: 1395236-1395374 [-]
• ame-mir-2944: CM000066.5: 1395048-1395172 [-]
• ame-mir-318: CM000066.5: 1394890-1395007 [-]

Database links

• EntrezGene:Mir9c
• RNAcentral:URS000075A5A0_7460
• miRBase Tracker:MI0016202

Mature sequence ame-miR-9c-3p

• Accession: MIMAT0018572
• Sequence: 79 - uaaagcuaguucagcaaggca - 99
• Evidence: experimental; SOLID [1]

References

1. PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).