miRBase entry: ame-mir-9c

Stem-loop ame-mir-9c


Accession
MI0016202
Description
Apis mellifera ame-mir-9c precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
0 open access papers mention ame-mir-9c
(0 sentences)

Sequence

gcuguuucacacauuucuaccaaaucgucccguuuauuuuucuuuggugagcuaacuguauggugaauugaaaggccaUAAAGCUAGUUCAGCAAGGCAagauauucgagacauagcuucaugaaaugugacugaaauu
...((((((((((((((.........(((.((..((((((.(((((.(((((((.((.((((((..........)))))).)).))))))).))))).))))))..)).)))..........))))))))..)))))).

Structure
gcu      --        -uaccaaauc   c  uu      u     g       a  g      gaau 
   guuuca  cacauuuc          guc cg  uauuuu cuuug ugagcua cu uauggu    u
   ||||||  ||||||||          ||| ||  |||||| ||||| ||||||| || ||||||     
   uaaagu  guguaaag          cag gc  auagaA GGAAC ACUUGAU GA AUaccg    g
--u      ca        uacuucgaua   a  uu      C     G       C  A      gaaa 


Annotation confidence Not enough data
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Genome context
CM000066.5: 1395236-1395374 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ame-mir-9c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-9c-3p

Accession MIMAT0018572
Description Apis mellifera ame-miR-9c-3p mature miRNA
Sequence 79 - UAAAGCUAGUUCAGCAAGGCA - 99
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805