miRBase entry: ame-mir-318

Stem-loop ame-mir-318


Accession
MI0016204
Description
Apis mellifera ame-mir-318 precursor miRNA


Sequence

acgcacugaauauuauaaguacaucaugggaugaacgugauccuguuugacgguaauaauugaucgUCACUGGGUUAUGUUUGUCCCauacgaguacugauuaaucaucgcuauugca
..(((.(((..((((..(((((.((((((((((((((((((((....(((((((........)))))))..))))))))))))))))))..)))))))...))))..)))....))).

Structure
ac   ---c   au    -ua     a  --                  uguu       aau 
  gca    uga  auua   aguac uc  augggaugaacgugaucc    ugacggu   a
  |||    |||  ||||   ||||| ||  ||||||||||||||||||    |||||||    
  cgu    gcu  uaau   ucaug ag  uaCCCUGUUUGUAUUGGG    ACUgcua   a
-a   uauc   ac    uag     -  ca                  --UC       guu 


Annotation confidence Not enough data
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Genome context
CM000066.5: 1394890-1395007 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ame-mir-318
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-318-3p

Accession MIMAT0018574
Description Apis mellifera ame-miR-318-3p mature miRNA
Sequence 67 - UCACUGGGUUAUGUUUGUCCC - 87
Evidence experimental
SOLID [1], Illumina [2]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226