miRBase entry: ame-mir-3477

Stem-loop ame-mir-3477


Accession
MI0016213
Description
Apis mellifera ame-mir-3477 precursor miRNA
Gene family
MIPF0001227; mir-3477


Sequence

uuugguagcguuggagugggUAAUCUCAUGCGGUAACUGUGAGugugugaauuguaaaagcucauauuaccucgugggguuucccacccguuaccauua
..(((((((...((.(((((.(((((((((.(((((.(((((((...............)))))))))))).))))))))).))))))))))))))...

Structure
-uu       guu  a     U         C     C       guguga 
   ugguagc   gg guggg AAUCUCAUG GGUAA UGUGAGu      a
   |||||||   || ||||| ||||||||| ||||| |||||||      u
   accauug   cc caccc uuggggugc ccauu auacucg      u
auu       ---  -     u         u     -       aaaaug 


Annotation confidence Not enough data
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Genome context
CM000055.5: 3363469-3363567 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ame-mir-3477
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-3477-5p

Accession MIMAT0018583
Description Apis mellifera ame-miR-3477-5p mature miRNA
Sequence 21 - UAAUCUCAUGCGGUAACUGUGAG - 43
Evidence experimental
SOLID [1], Illumina [2]

References

  1. PubMed ID: 20807255
    Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
    "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
    "Insect Mol Biol (2010) 19:799-805

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670