Stem-loop ame-mir-3801

Accession

MI0016218

Description

Apis mellifera ame-mir-3801 precursor miRNA

Sequence

auuggauccgguacaguguacaguuuugcgguacaAAUCGCGAUUGAGAAGGCGAGCcguaaugcaggcguauguacguaacaaucgcaacgguucgaugucagcgggguuuaucgagcuagaagguacggccuuggucu
...(((((.(((....(((((..(((.((.....(((((.((.((((.(...((((((((..(((..((((....)))).......))))))))))).).)))))).))))).....)).)))..))))))))..)))))

Structure

auu     -c   acag     ag   u  gguac     G  A    G AGG        aa   -----ag    a 
   ggauc  ggu    uguac  uuu gc     aAAUC CG UUGA A   CGAGCcgu  ugc       gcgu u
   |||||  |||    |||||  ||| ||     ||||| || |||| |   ||||||||  |||       ||||  
   ucugg  ccg    gcaug  aga cg     uuugg gc gacu u   gcuuggca  acg       ugca g
---     uu   ----     ga   u  agcua     g  -    g --a        --   cuaacaa    u 

Annotation confidence Not enough data

Genome context

CM000055.5: 11825440-11825579 [+]

Mature ame-miR-3801-5p

• Accession: MIMAT0018588
• Description: Apis mellifera ame-miR-3801-5p mature miRNA
• Sequence: 36 - AAUCGCGAUUGAGAAGGCGAGC - 57
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805