miRBase entry: tgu-mir-10a

Stem-loop tgu-mir-10a


Accession
MI0016248
Description
Taeniopygia guttata tgu-mir-10a precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

acagaauguuauuacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugauauucauauagucacAGAUUCGAUUCUAGGGGAAUauauggucgaugcaaaaacuucac
...(((.(((.((.(((((.((((((((.((((.(((((.((((((((((...(((....)))..)))))))))).))))))))).)))))))).))))).)).))))))..

Structure
aca   u   a  a     u        A    G     C          uga   u 
   gaa guu uu cguug cuauauaU CCCU UAGAA CGAAUUUGUg   uau c
   ||| ||| || ||||| |||||||| |||| ||||| ||||||||||   |||  
   cuu caa aa guagc gguauaUA GGGG AUCUU GCUUAGAcac   aua a
-ca   -   a  c     u        A    -     A          -ug   u 


Annotation confidence Not enough data
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Genome context
chr7: 17079281-17079392 [+]

Database links

Mature tgu-miR-10a-5p

Accession MIMAT0018618
Description Taeniopygia guttata tgu-miR-10a-5p mature miRNA
Sequence 28 - UACCCUGUAGAACCGAAUUUGU - 49
Evidence experimental
Illumina [2]

Mature tgu-miR-10a-3p

Accession MIMAT0027035
Description Taeniopygia guttata tgu-miR-10a-3p mature miRNA
Sequence 69 - AGAUUCGAUUCUAGGGGAAU - 88
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21627805
    Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain
    Gunaratne PH, Lin YC, Benham AL, Drnevich J, Coarfa C, Tennakoon JB, Creighton CJ, Kim JH, Milosavljevic A, Watson M, Griffiths-Jones S, Clayton DF
    BMC Genomics (2011) 12:277

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727