miRBase entry: tca-mir-3804b

Stem-loop tca-mir-3804b


Accession
MI0016259
Description
Tribolium castaneum tca-mir-3804b precursor miRNA
Gene family
MIPF0001255; mir-3804


Sequence

cucggguuaucagcucaUUGCACACAACAAUGUCCACAUUCUUgcgauuucauacgucacUGGAAUGUUCCAUAAGUGUGCgaaaucagcgguagcaaaag
.....((((((.(((..((((((((....(((...(((((((.(.(((.......))).).)))))))..)))..))))))))....))))))))).....

Structure
cucgg      a   --ca        AACA   UCC       U c   uu 
     guuauc gcu    UUGCACAC    AUG   ACAUUCU g gau  c
     |||||| |||    ||||||||    |||   ||||||| | |||  a
     cgaugg cga    agCGUGUG    UAC   UGUAAGG c cug  u
gaaaa      -   cuaa        --AA   -CU       U a   ca 


Annotation confidence Not enough data
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Genome context
ChLG10: 5151402-5151502 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-3804b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3804b-5p

Accession MIMAT0018626
Description Tribolium castaneum tca-miR-3804b-5p mature miRNA
Sequence 18 - UUGCACACAACAAUGUCCACAUUCUU - 43
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3804b-3p

Accession MIMAT0018627
Description Tribolium castaneum tca-miR-3804b-3p mature miRNA
Sequence 61 - UGGAAUGUUCCAUAAGUGUGC - 81
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696