miRBase entry: tca-mir-3808

Stem-loop tca-mir-3808


Accession
MI0016265
Description
Tribolium castaneum tca-mir-3808 precursor miRNA
Gene family
MIPF0001202; mir-3811


Sequence

uuuaagaggguuuuaaccaauuuuucagucUCAUAUUCGCACUUGACAUAUUuuggauuaaauaaaaUAUGUACACGUGUGGAUAUGGGGccgaaguugguacagucaacgg
.....((..((....(((((((((...(((((((((((((((.((((((((((((.......)))))))))).)).))))))))))))))).)))))))))))..)).....

Structure
uuuaa  gg  uuua         uca               U  -          ga 
     ga  gu    accaauuuu   gucUCAUAUUCGCAC UG ACAUAUUuug  u
     ||  ||    |||||||||   ||||||||||||||| || ||||||||||  u
     cu  ca    ugguugaag   cGGGGUAUAGGUGUG AC UGUAUaaaau  a
ggcaa  ga  ----         --c               C  A          aa 


Annotation confidence Not enough data
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Genome context
ChLGX: 5786212-5786323 [-]
Clustered miRNAs
36 other miRNAs are < 10 kb from tca-mir-3808
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3808-5p

Accession MIMAT0018638
Description Tribolium castaneum tca-miR-3808-5p mature miRNA
Sequence 31 - UCAUAUUCGCACUUGACAUAUU - 52
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3808-3p

Accession MIMAT0018639
Description Tribolium castaneum tca-miR-3808-3p mature miRNA
Sequence 68 - UAUGUACACGUGUGGAUAUGGGG - 90
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696