miRBase entry: tca-mir-3811a-3

Stem-loop tca-mir-3811a-3


Accession
MI0016271
Description
Tribolium castaneum tca-mir-3811a-3 precursor miRNA
Gene family
MIPF0001202; mir-3811


Sequence

aaguuuuauccaauucucaggaUUCUUCUCAGGGUUUACAUGUUuuggucuaaauaugaaaUAUGUACAACCGUGAGUGGAGACCuggggguugguuagucaac
.....(((.((((((((((((.((((.((((.(((((((((((((((.........))))))))))).)))).)))).)))).)))))))))))).))).....

Structure
aaguu   u            a    U    G    -           guc 
     uua ccaauucucagg UUCU CUCA GGUU UACAUGUUuug   u
     ||| |||||||||||| |||| |||| |||| |||||||||||   a
     gau gguuggggguCC GAGG GAGU CCAA AUGUAUaaagu   a
caacu   u            A    U    G    C           aua 


Annotation confidence Not enough data
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Genome context
ChLGX: 5784317-5784420 [-]
Clustered miRNAs
29 other miRNAs are < 10 kb from tca-mir-3811a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3811a-3p

Accession MIMAT0018645
Description Tribolium castaneum tca-miR-3811a-3p mature miRNA
Sequence 62 - UAUGUACAACCGUGAGUGGAGACC - 85
Evidence experimental
SOLID [1]

Mature tca-miR-3811a-3-5p

Accession MIMAT0018650
Description Tribolium castaneum tca-miR-3811a-3-5p mature miRNA
Sequence 23 - UUCUUCUCAGGGUUUACAUGUU - 44
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696