miRBase entry: tca-mir-3842

Stem-loop tca-mir-3842


Accession
MI0016311
Description
Tribolium castaneum tca-mir-3842 precursor miRNA


Sequence

ucccacaaccuaacaacaAGGAGGAAAAACGAGUCGGucggcauggcacugaugcGAACGCUUCGUUUUUAUCCUUGuuguuuuaucguugaaaau
.....((((..(((((((((((..(((((((((.((.(((.(((.......)))))).)).))))))))).))))))))))).....)))).....

Structure
uccca    ---cu           GG         U  G   g   gg 
     caac     aacaacaAGGA  AAAAACGAG CG ucg cau  c
     ||||     |||||||||||  ||||||||| || ||| |||  a
     guug     uuguuGUUCCU  UUUUUGCUU GC AGc gua  c
uaaaa    cuauu           -A         C  A   -   gu 


Annotation confidence Not enough data
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Genome context
ChLG3: 560957-561052 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from tca-mir-3842
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3842-5p

Accession MIMAT0018728
Description Tribolium castaneum tca-miR-3842-5p mature miRNA
Sequence 19 - AGGAGGAAAAACGAGUCGG - 37
Evidence experimental
SOLID [1]

Mature tca-miR-3842-3p

Accession MIMAT0018729
Description Tribolium castaneum tca-miR-3842-3p mature miRNA
Sequence 56 - GAACGCUUCGUUUUUAUCCUUG - 77
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696