miRBase entry: tca-mir-3477

Stem-loop tca-mir-3477


Accession
MI0016315
Description
Tribolium castaneum tca-mir-3477 precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

ugcacgcuugacugcguuucguUAAUCUCAUUUGGUAACUGUGAGGuuuguuuauuccUCAGACUACUGAAUGGGAUCGACaaaaugugguuuuguuuuca
.....((..((((((((((.(((.(((((((((((((..(.(((((..........))))).).))))))))))))).))).))))))))))..)).....

Structure
ugcac  uu          c   A             AC G     uuug 
     gc  gacugcguuu guU AUCUCAUUUGGUA  U UGAGG    u
     ||  |||||||||| ||| |||||||||||||  | |||||     
     ug  uugguguaaa CAG UAGGGUAAGUCAU  A ACUcc    u
acuuu  uu          a   C             -C G     uuau 


Annotation confidence Not enough data
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Genome context
ChLG3: 19663710-19663810 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from tca-mir-3477
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3477-5p

Accession MIMAT0018736
Description Tribolium castaneum tca-miR-3477-5p mature miRNA
Sequence 23 - UAAUCUCAUUUGGUAACUGUGAGG - 46
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3477-3p

Accession MIMAT0018737
Description Tribolium castaneum tca-miR-3477-3p mature miRNA
Sequence 59 - UCAGACUACUGAAUGGGAUCGAC - 81
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696