miRBase entry: tca-mir-3852

Stem-loop tca-mir-3852


Accession
MI0016327
Description
Tribolium castaneum tca-mir-3852 precursor miRNA


Sequence

cuccaugacgucacacucuuaauACGGGGCCUUUAAGGAGUucugcggcuUCUUCUGCGCCAUAAUUGUAuuaauaucgcggugacgcaacgac
.((..((.((((((....((((((((((((....((((((((....))))))))....)))....))))))))).......))))))))..)).

Structure
c  ca  a      ---acuc         ----   CUUU        c 
 uc  ug cgucac       uuaauACGG    GGC    AAGGAGUu u
 ||  || ||||||       |||||||||    |||    ||||||||  
 ag  ac gcagug       aauuAUGUU    CCG    UUCUucgg g
c  ca  -      gcgcuau         AAUA   CGUC        c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLG5: 14767953-14768046 [-]

Database links

Mature tca-miR-3852-5p

Accession MIMAT0018760
Description Tribolium castaneum tca-miR-3852-5p mature miRNA
Sequence 24 - ACGGGGCCUUUAAGGAGU - 41
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3852-3p

Accession MIMAT0018761
Description Tribolium castaneum tca-miR-3852-3p mature miRNA
Sequence 51 - UCUUCUGCGCCAUAAUUGUA - 70
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696