miRBase entry: tca-mir-3873

Stem-loop tca-mir-3873


Accession
MI0016367
Description
Tribolium castaneum tca-mir-3873 precursor miRNA


Sequence

uuauuaguuguuGCCGAAUGUUAUAAGGUUugcauucguuaggaauauauuaauuguuaaaacgaaaauccaaauaaauuguucuugaAUGUAAUUUUAGCUCAUAAUuguaauaauuuaacc
.....(((((((((...(((...(((((((.(((((((...((((((..(((.(((..............))).)))..))))))))))))))))))))...)))....))))))))).....

Structure
uuauu         -CGA   UUA       u       uua      ua   a   uuaaaa 
     aguuguuGC    AUG   UAAGGUU gcauucg   ggaaua  uua uug      c
     |||||||||    |||   ||||||| |||||||   ||||||  ||| |||       
     uuaauaaug    UAC   AUUUUAA UGUAagu   ucuugu  aau aac      g
ccaau         uUAA   UCG       -       ---      ua   a   cuaaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLG7: 4215103-4215225 [-]

Database links

Mature tca-miR-3873-5p

Accession MIMAT0018838
Description Tribolium castaneum tca-miR-3873-5p mature miRNA
Sequence 13 - GCCGAAUGUUAUAAGGUU - 30
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3873-3p

Accession MIMAT0018839
Description Tribolium castaneum tca-miR-3873-3p mature miRNA
Sequence 89 - AUGUAAUUUUAGCUCAUAAU - 108
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696