miRBase entry: tca-mir-3878

Stem-loop tca-mir-3878


Accession
MI0016372
Description
Tribolium castaneum tca-mir-3878 precursor miRNA


Sequence

ugauagguguggUGGACGGAGAACUAAUUGUauuaaaauugcuaccuacuugcuucgauuugaaAUUUUUAGUGUCCGUGUUGuuauca
.....((((....(.(((((..(((((..((.(((((...((.........)).....))))).))..))))).))))).)...)))).

Structure
ugaua    uggU G     GA     UU  a     --auu  uac 
     ggug    G ACGGA  ACUAA  GU uuaaa     gc   c
     ||||    | |||||  |||||  || |||||     ||   u
     cuau    U UGCCU  UGAUU  UA aguuu     cg   a
----a    -uGU G     -G     UU  a     agcuu  uuc 


Annotation confidence Not enough data
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Genome context
ChLG4: 7036532-7036620 [+]

Database links

Mature tca-miR-3878-5p

Accession MIMAT0018848
Description Tribolium castaneum tca-miR-3878-5p mature miRNA
Sequence 13 - UGGACGGAGAACUAAUUGU - 31
Evidence experimental
SOLID [1]

Mature tca-miR-3878-3p

Accession MIMAT0018849
Description Tribolium castaneum tca-miR-3878-3p mature miRNA
Sequence 65 - AUUUUUAGUGUCCGUGUUG - 83
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696