miRBase entry: tca-mir-3889

Stem-loop tca-mir-3889


Accession
MI0016386
Description
Tribolium castaneum tca-mir-3889 precursor miRNA


Sequence

uguaauaaacucacaaaaugcgACUUGUUCUCUCUGUAUUGUGUGgaguugcucaUAGUACGGAUUGAACACGUCGCuguuuuugaguuuacgcuu
.....((((((((.(((..(((((.(((((..(((((((((((.(......).)))))))))))..))))).)))))..))).)))))))).....

Structure
uguaa        c   au     U     UC           U ga 
     uaaacuca aaa  gcgAC UGUUC  UCUGUAUUGUG G  g
     |||||||| |||  ||||| |||||  ||||||||||| |   
     auuugagu uuu  CGCUG ACAAG  AGGCAUGAUac c  u
uucgc        u   gu     C     UU           u gu 


Annotation confidence Not enough data
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Genome context
ChLG3: 15203725-15203820 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from tca-mir-3889
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3889-5p

Accession MIMAT0018876
Description Tribolium castaneum tca-miR-3889-5p mature miRNA
Sequence 23 - ACUUGUUCUCUCUGUAUUGUGUG - 45
Evidence experimental
SOLID [1]

Mature tca-miR-3889-3p

Accession MIMAT0018877
Description Tribolium castaneum tca-miR-3889-3p mature miRNA
Sequence 56 - UAGUACGGAUUGAACACGUCGC - 77
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696