Stem-loop sequence tae-MIR169

Accession

MI0016460 (change log)

Description

Triticum aestivum miR169 stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

23 open access papers mention tae-MIR169
(92 sentences)

Stem-loop

   -     ----        ccau     -a     a   a             a    c  uu   a   ga          
5'  ugggg    guaagagg    cuucg  uagcc agg ugauuugccugug aacu cc  ggc gcc  gcucucugc 
    |||||    ||||||||    |||||  ||||| ||| ||||||||||||| |||| ||  ||| |||  |||||||| c
3'  acccc    cauucucc    gaagc  aucgg ucc acugaacggguac uugg gg  cug cgg  cgagagaca 
   u     acac        --au     cc     g   c             c    c  -c   -   --          

Deep sequencing

12392 reads, 9.48 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0016460

Mature sequence tae-miR169

• Accession: MIMAT0018219
• Sequence: 103 - gggcaagucacccugggcuacc - 124
• Deep sequencing: 59 reads, 58 experiments
• Evidence: not experimental

References

1. PMID:18521122 "Data mining for miRNAs and their targets in the Triticeae" Dryanova A, Zakharov A, Gulick PJ Genome. 51:433-443(2008).