miRBase entry: tae-MIR398

Stem-loop tae-MIR398


Accession
MI0016466
Description
Triticum aestivum tae-MIR398 precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
22 open access papers mention tae-MIR398
(76 sentences)

Sequence

1861379 reads, 8629 reads per million, 116 experiments
auacgcgaggaaauuccugcggggucgaacugggaacacaugggauacgaaccgcuugauugacgagcgacucuuaucaacucaUGUGUUCUCAGGUCGCCCCCGcuggagccuccucgc
....(((((((..((((.((((((.(((.((((((((((((((((((.((..((((((.....))))))..)).))))...)))))))))))))).))).)))))).))))..)))))))

Structure
auac       aa    u      u   a              ---    c  ac      a 
    gcgagga  uucc gcgggg cga cugggaacacaugg   gaua ga  cgcuug u
    |||||||  |||| |||||| ||| ||||||||||||||   |||| ||  |||||| u
    cgcuccu  gagg cGCCCC GCU GACUCUUGUGUacu   cuau cu  gcgagc g
----       cc    u      C   G              caa    u  ca      a 


Annotation confidence High
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Genome context
3B: 662632381-662632500 [+]

Database links

Mature tae-miR398

Accession MIMAT0018225
Description Triticum aestivum tae-miR398 mature miRNA
Sequence 85 - UGUGUUCUCAGGUCGCCCCCG - 105
Evidence not_experimental

References

  1. PubMed ID: 18521122
    Data mining for miRNAs and their targets in the Triticeae
    "Dryanova A, Zakharov A, Gulick PJ"
    "Genome (2008) 51:433-443