miRBase entry: tae-MIR444b

Stem-loop tae-MIR444b


Accession
MI0016467
Description
Triticum aestivum tae-MIR444b precursor miRNA
Gene family
MIPF0000402; MIR444

Literature search
13 open access papers mention tae-MIR444b
(34 sentences)

Sequence

13681 reads, 91 reads per million, 116 experiments
gauaugcauguggcggcaccgagcaugaggcaacaacugcauuacuugcggggaaggcgcaaguaggacaccugcauuacuugcaaacaaggcgcaccauacuuguggcuuucuugcaagucgugcagUUGCUGCCUCAAGCUUGCUGCcuccacauguaua
..(((((((((((.((((.(((((.(((((((.(((((((((.(((((((((((((.((((((((((.(.((((((.....))).....))).)..)).)))))))).))))))))))))).))))))))).))))))).))))).)))).)))))))))))

Structure
ga           c    c     a       a         u             g        -  -a a   -----   u 
  uaugcaugugg ggca cgagc ugaggca caacugcau acuugcggggaag cgcaagua gg  c ccu     gca u
  ||||||||||| |||| ||||| ||||||| ||||||||| ||||||||||||| |||||||| ||  | |||     ||| a
  auauguacacc cCGU GUUCG ACUCCGU GUUgacgug ugaacguucuuuc guguucau cc  g gga     cgu c
--           u    C     A       C         c             g        a  ac c   acaaa   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tae-miR444b

Accession MIMAT0018226
Description Triticum aestivum tae-miR444b mature miRNA
Sequence 129 - UUGCUGCCUCAAGCUUGCUGC - 149
Evidence not_experimental

References

  1. PubMed ID: 18521122
    Data mining for miRNAs and their targets in the Triticeae
    "Dryanova A, Zakharov A, Gulick PJ"
    "Genome (2008) 51:433-443